2023
Intensive longitudinal assessment of mobility, social activity and loneliness in individuals with severe mental illness during COVID-19. Valeri L., Rahimi-Eichi R., Liebenthal E., Rauch S., Schutt R., Ongur D., Dixon L., Onnela JP., Baker JT.
Predicting states of elevated negative affect in adolescents from smartphone sensors: A novel personalized machine learning approach. Ren B., Balkind E., Pastro B., Israel E., Pizzagalli D., Rahimi-Eichi R., Baker JT., Webb C.
Remote monitoring of depression severity: A machine learning approach. Holstein V., Rahimi-Eichi R., Emden D., Gutfleisch L., Refisch A., Goltermann J., Leenings R., Winter NR., Kircher T., Nenadic I., Redlich R., Leehr EJ., Dohm K., Baker JT., Dannlowski U., Opel N., Hahn T.
New and emerging approaches to treat psychiatric disorders. Scangos K., State M., Miller A., Baker JT., Williams L.
Returning Individual Research Results from Digital Phenotyping in Psychiatry. Shen F., Baum M., Martinez-Martin N., Miner A., Abraham M., Brownstein C., Cortez N., Evans B., Germine L., Glahn D., Grady C., Holm I., Hurley E., Kimble S., Lázaro-Muñoz G., Leary K., Marks M., Monette P., Onnela JP., O’Rourke P., Rauch S., Shachar C., Sen S., Vahia I., Vassy J., Baker JT., Bierer B., Silverman B.
2022
Linguistic and non-linguistic markers of disorganization in psychotic illness. Liebenthal E., Ennis M., Rahimi-Eichi H., Lin E., Chung Y., Baker JT.
Fluctuations in behavior and affect in college students measured using deep phenotyping. Bustamante C., Coombs G., Rahimi-Eichi H., Mair P., Onnela JP., Baker JT., Buckner R.
An ethics checklist for digital health research in psychiatry. Shen F., Silverman B., Monette P., Kimble S., Rauch S., Baker JT.
Deconstructing dissociation: a triple network model of trauma-related dissociation and its subtypes. Lebois L., Kumar P., Palermo C., Lambros A., O’Connor L., Wolff J., Baker JT., Gruber S., Lewis-Schroeder N., Ressler K., Robinson M., Winternitz S., Nickerson L., Kaufman M.
State space model multiple imputation for missing data in non-stationary multivariate time series with application in digital Psychiatry. Cai X., Wang X., Zeng L., Rahimi-Eichi H., Ongur D., Dixon L., Baker JT., Onnela JP., Valeri L.
Measures of Behavior and Life Dynamics from Commonly Available GPS Data (DPLocate): Algorithm Development and Validation. Rahimi-Eichi H., Coombs G., Onnela JP., Baker JT., Buckner R.
Mobile footprinting: linking individual distinctiveness in mobility patterns to mood, sleep, and brain functional connectivity. Xia CH., Barnett I., Tapera T., Adebimpe A., Baker JT., Bassett D., Brotman M., Calkins M., Cui Z., Leibenluft E., Linguiti S., Lydon-Staley D., Lynne Martin M., Moore T., Murtha K., Piiwaa K., Pines A., Roalf D., Rush-Goebel S., Wolf D., Ungar L., Satterthwaite T.
Testing unit root non-stationarity in the presence of missing data in univariate time series of mobile health studies. Fowler C., Cai X., Baker JT., Onnela JP., Valeri L.
2021
Quantitative Systems Pharmacology in Neuroscience: Novel Methodologies and Technologies. Bloomingdale P., Karelina T., Cirit M., Muldoon S., Baker J., McCarty W., Geerts H., Macha S.
Will artificial intelligence eventually replace psychiatrists? Brown C., Story GW., Mourão-Miranda J., Baker JT .
Sociodemographic Characteristics of Missing Data in Digital Phenotyping Kiang M., Chen JT., Krieger N., Buckee C., Alexander MJ., Baker JT., Buckner R., Coombs G., Rich-Edwards J., Carlson K., Onnela JP.
Quantum computing at the frontiers of biological sciences Emani PS, Warrell J., Anticevic A., Bekiranov S., Gandal M., McConnell MJ., Sapiro G., Aspuru-Guzik A., Baker JT., Bastiani M, Murray JD., Sotiropoulos SN., Taylor J., Senthil G., Lehner T., Gerstein MB., Harrow A.
DPSleep: Open-Source Longitudinal Sleep Analysis From Accelerometer Data Eichi H., Coombs G., Bustamante C., Onnela JP., Baker JT., Buckner R.
Computational Analysis of Spoken Language in Acute Psychosis and Mania. Girard, J. M., Vail, A. K., Liebenthal E., Brown, K., Kilciksiz, C. M., Pennant, L., Baker, J. T.
Abnormal Semantic Processing of Threat Words Associated with Excitement and Hostility Symptoms in Schizophrenia. Dar, S., Liebenthal E., Pan H., Smith T., Savitz A., Landa Y., Silbersweig D., Stern E.
2020
Connectivity patterns of task-specific brain networks allow individual prediction of cognitive symptom dimension of schizophrenia and link to molecular architecture Chen J, Mueller V, Dukart J, Hoffstaedter F, Baker JT, Holmes AJ, Vatansever D, Nickl-Jockschat T, Liu X, Derntl B, Kogler L, Jardri R, Gruber O, Aleman A, Sommer I, Eickhoff SB, Patil KR. bioRxiv. 2020 Jan 1.
Determining sample size and length of follow-up for smartphone-based digital phenotyping studies Barnett I, Torous J, Reeder HT, Baker JT, Onnela JP. Journal of the American Medical Informatics Association. 2020 Oct 12.
Intrinsic connectivity patterns of task-defined brain networks allow individual prediction of cognitive symptom dimension of schizophrenia and are linked to molecular architecture Chen J, Müller V, Dukart J, Hoffstaedter F, Baker JT, Holmes AJ, Vatansever D, Nickl-Jockschat T, Liu X, Derntl B, Kogler L, Jardri R, Gruber O, Aleman A, Sommer I, Eickhoff SB, Patil KR. Biological Psychiatry. 2020 Oct 3.
Large-Scale Functional Brain Network Architecture Changes Associated With Trauma-Related Dissociation Lebois L, Li M, Baker JT, Wolff JD, Wang J, Lambros AM, Grinspoon E, Winternitz S, Ren J, Gönenç A, Gruber S, Ressler KJ, Liu H, Kaufman M. American Journal of Psychiatry. 2020 Sept 25.
Realizing the clinical potential of computational psychiatry: report From the Banbury Center Meeting, February 2019 Browning M, Carter C, Chatham C, Ouden H, Gillan C, Baker JT, Chekroud A, Cools R, Dayan P, Gold J, Goldstein R, Hartley C, Kepecs A, Lawson R, Mourao-Miranda J, Phillips M, Pizzagalli D, Powers A, Rindskopf D, Roiser JP, Schmack K, Schiller D, Sebold M, Stephan K, Frank M, Huys Q, Paulus M. Biological psychiatry. 2020 Jul 15.
Preliminary Phenotypic Feature Capture During Clinical InteractionBarron D, Heisig S, Norel R, Agurto C, Quagan B, Powers A, Baker JT, Constable RT, Cecchi G, Krystal J. Biological Psychiatry. 2020 May 1.
Uncovering Relationships Between Mood, Movement, and Neural Activity via Dense Longitudinal Data From an Obsessive-Compulsive Disorder Patient Undergoing Deep Brain Stimulation Ennis M, Shiff I, Fairbank-Haynes K, Bilge MT, Basu I, Dougherty D, Widge A, Baker JT.
2019
Will artificial intelligence eventually replace psychiatrists? Brown C, Story GW, Mourão-Miranda J, Baker JT. The British Journal of Psychiatry. 2019 Dec 6.
Functional connectomics of affective and psychotic pathology. Baker JT, Dillon DG, Patrick LM, Roffman JL, Brady RO Jr, Pizzagalli DA, Öngür D, Holmes AJ. Proc Natl Acad Sci U S A. 2019 Apr 15. pii: 201820780. doi: 10.1073/pnas.1820780116
Functional connectivity in distinct cognitive subtypes in psychosis. Lewandowski KE, McCarthy JM, Öngür D, Norris LA, Liu GZ, Juelich RJ, Baker JT. Schizophr Res. 2019 Feb;204:120-126. doi: 10.1016/j.schres.2018.08.013
The Digital Future of Psychiatry. Baker JT. Psychiatric Annals. 2019; 49(5): 193-194.
Precision Brain Morphometry: Feasibility and Opportunities of Extreme Rapid Scans Nielsen J, Mair R, Baker JT, Buckner R. bioRxiv. 2019 Jan 1.
Will neuroimaging produce a clinical tool for psychiatry? Ghosh S, Baker JT. Psychiatric Annals. 2019 May 9.
Use of an individual level approach to identify cortical connectivity biomarkers in obsessive-compulsive disorder. Brennan BP, Wang D, Li M, Perriello C, Ren J, Elias JA, Van Kirk NP, Krompinger JW, Pope HG Jr, Haber SN, Rauch SL, Baker JT, Liu H. Biol Psychiatry Cogn Neurosci Neuroimaging. 2019 Jan;4(1):27-38. doi: 10.1016/j.bpsc.2018.07.014.
2018
Individual-specific functional connectivity markers track dimensional and categorical features of psychotic illness. Wang D, Li M, Wang M, Schoeppe F, Ren J, Chen H, Brady RO Jr., Öngür D, Baker JT*, Liu H*. Molecular Psychiatry. 2018 Nov 15:1.
Using Smartphone Apps to Promote Psychiatric Rehabilitation in a Peer-Led Community Support Program. Mueller NE, Panch T, Macias C, Cohen BM, Ongur D, Baker JT. Pilot Study. JMIR mental health, 5(3).
Use of an Individual-Level Approach to Identify Cortical Connectivity Biomarkers in Obsessive-Compulsive Disorder. Brennan BP, Wang D, Li M, Perriello C, Ren J, Elias JA, Van Kirk NP, Krompinger JW, Pope HG Jr, Haber SN, Rauch SL, Baker JT, Liu H. Biol Psychiatry Cogn Neurosci Neuroimaging. 2018 Aug 16. pii: S2451-9022(18)30189-7.
Smaller Hippocampal Volume in Posttraumatic Stress Disorder: A Multisite ENIGMA-PGC Study: Subcortical Volumetry Results From Posttraumatic Stress Disorder… MW Logue, SJH van Rooij, EL Dennis, SL Davis, JP Hayes, JS Stevens, … Biological psychiatry 83 (3), 244-253
Nicotine-induced activation of caudate and anterior cingulate cortex in response to errors in schizophrenia. Moran LV, Stoeckel LE, Wang K, Caine CE, Villafuerte R, Calderon V, Baker JT, Ongur D, Janes AC, Evins AE, Pizzagalli DA. Psychopharmacology (Berl). 235(3):789-802.
Curriculum Overhaul in Psychiatric Residency: An Innovative Approach to Revising the Didactic Lecture Series. Benson NM, Puckett JA, Chaukos DC, Gerken AT, Baker JT, Smith FA, Beach SR. Academic Psychiatry. 42(2): 258-261.
The human cortex possesses a reconfigurable dynamic network architecture that is disrupted in psychosis. Reinen JM, Chén OY, Hutchison RM, Yeo BTT, Anderson KM, Sabuncu MR, Öngür D, Roffman JL, Smoller JW, Baker JT, Holmes AJ. Nature Commun. 2018 Mar 20;9(1):1157.
2017
Visual attention in schizophrenia: Eye contact and gaze aversion during clinical interactions…AK Vail, T Baltrusaitis, L Pennant, E Liebson, J Baker, LP Mordancy 2017 Seventh International Conference on Affective Computing and Intelligent …
Use of an Individual-Level Approach to Identify Cortical Connectivity Biomarkers of Global and Dimensional Symptom Severity and Improvement in Obsessive-Comp…B Brennan, D Wang, M Li, C Perriello, J Elias, N Van Kirk, J Krompinger, .. .Neuropsychopharmacology 43, S116-S117
Reproducibility of Cognitive Profiles in Psychosis Using Cluster Analysis KE Lewandowski, JT Baker, JM McCarthy, LA Norris, D Öngür Journal of the International Neuropsychological Society, 1-9
Nicotine Increases Activation to Anticipatory Valence Cues in Anterior Insula and Striatum. LV Moran, LE Stoeckel, K Wang, CE Caine, R Villafuerte, V Calderon, JT Baker… Nicotine and Tobacco Research, 20(7): 851-858.
Partitioning heritability analysis reveals a shared genetic basis of brain anatomy and schizophrenia. PH Lee, JT Baker, AJ Holmes, N Jahanshad, T Ge, JY Jung, Y Cruz… Molecular Psychiatry, 22(8): 1224.
Methodology and Reporting of Mobile Heath and Smartphone Application Studies for Schizophrenia. Torous J, Firth J, Mueller N, Onnela JP, Baker JT. Harvard Review of Psychiatry. 2017; (3):146-154
Aberrant cerebellar connectivity in bipolar disorder with psychosis. AK Shinn, YS Roh, CT Ravichandran, JT Baker, D Öngür, BM Cohen. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging. 2(5):438-448.
Deep dynamic phenotyping: Neural changes underlying fluctuations in bipolar disorder over one year. JT Baker, N Mueller, JP Onnella, D Öngür, R Buckner. Biological Psychiatry. 81(10): S150-S151.
Deducing the severity of psychiatric symptoms from the human voice. R Singh, JT Baker, L Pennant, LP Morency. arXiv preprint arXiv:1703.05344
McLean OnTrack: A transdiagnostic program for early intervention in first-episode psychosis. AK Shinn, KW Bolton, R Karmacharya, KE Lewandowsky, C Yuksel, JT Baker … Early Intervention in Psychiatry 11(1): 83-90.
Computational analysis of acoustic descriptors in psychotic patients. T Wörtwein, T Baltrusaitis, E Laksana, L Pennant, ES Liebson, D Öngür… Proc. Interspeech: 3256-3260
2016
Toward Expert Systems in Mental Health Assessment: A Computational Approach to the Face and Voice in Dyadic Patient-Doctor Interactions. JT Baker, L Pennant, T Baltrusaitis, S Vijay, ES Liebson, D Öngür…Iproceedings, 2(1): e44.
Computational study of psychosis symptoms and facial expressions. S Vijay, T Baltrusaitis, L Pennant, D Öngür, JT Baker, LP Morency. CHI Workshops.
Why psychiatry needs data science and data science needs psychiatry: connecting with technology. J Torous, JT Baker. JAMA Psychiatry 73(1): 3-4.